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THAPSDRAFT_263963 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7452963, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_263963
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_263963
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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Location:
chromosome: 13
Exon count:
4
Sequence:
Chromosome: 13; NC_012076.1 (72726..74612, complement)

Chromosome 13 - NC_012076.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012076.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in Golgi to vacuole transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein targeting to vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of AP-3 adaptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of membrane coat IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_002293485.1
  • C-terminal half is lacking, putative pseudogene; delta subunit of clathrin adaptor protein complex AP3 (APD3), fragment

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012076.1 Reference assembly

    Range
    72726..74612 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002293449.1 → XP_002293485.1  hypothetical protein THAPSDRAFT_263963, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002293485.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CAY2
    Conserved Domains (3) summary
    pfam01602
    Location:23 → 495
    Adaptin_N; Adaptin N terminal region
    pfam12717
    Location:153 → 279
    Cnd1; non-SMC mitotic condensation complex subunit 1
    sd00044
    Location:181 → 209
    HEAT; HEAT repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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