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CBL1 cystathionine beta-lyase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7452677, updated on 21-Dec-2023

Summary

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Gene symbol
CBL1
Gene description
cystathionine beta-lyase
Locus tag
THAPSDRAFT_9830
Gene type
protein coding
RNA name
cystathionine beta-lyase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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Location:
chromosome: 14
Exon count:
1
Sequence:
Chromosome: 14; NC_012077.1 (485351..486496, complement)

Chromosome 14 - NC_012077.1Genomic Context describing neighboring genes Neighboring gene t-complex protein 1 alpha subunit chaperonin-like protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012077.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbon-sulfur lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transsulfuration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
cystathionine beta-lyase
XP_002293930.1
  • Enzyme of the methionine metabolism pathway. Also shows good similarity to cystathionine gamma-lyase and cystathionine gamma synthase.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012077.1 Reference assembly

    Range
    485351..486496 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002293894.1 → XP_002293930.1  cystathionine beta-lyase [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002293930.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CCE6
    Conserved Domains (2) summary
    PRK08776
    Location:3 → 378
    PRK08776; cystathionine gamma-synthase; Provisional
    cl18945
    Location:2 → 379
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
Nucleotide Protein
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