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THAPSDRAFT_268640 mannosyloligosaccharid alpha-mannosidase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7452605, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_268640
Gene description
mannosyloligosaccharid alpha-mannosidase
Locus tag
THAPSDRAFT_268640
Gene type
protein coding
RNA name
mannosyloligosaccharid alpha-mannosidase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_268640 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_012067.1 (555464..556900, complement)

Chromosome 4 - NC_012067.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene adenylate cyclase Neighboring gene mannosyl-oligosaccharide 1,2-alpha-mannosidase Neighboring gene eukaryotic translation initiation factor 3, subunit 10

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012067.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
mannosyloligosaccharid alpha-mannosidase
XP_002289677.1
  • involved in processing N-glycan moieties in the endoplasmic reticulum

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012067.1 Reference assembly

    Range
    555464..556900 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002289641.1 → XP_002289677.1  mannosyloligosaccharid alpha-mannosidase [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002289677.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C1C0
    Conserved Domains (1) summary
    pfam01532
    Location:1 → 441
    Glyco_hydro_47; Glycosyl hydrolase family 47
Nucleotide Protein
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