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THAPSDRAFT_261140 UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7452531, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_261140
Gene description
UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase
Locus tag
THAPSDRAFT_261140
Gene type
protein coding
RNA name
UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_261140 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_012064.1 (2683392..2684159, complement)

Chromosome 1 - NC_012064.1Genomic Context describing neighboring genes Neighboring gene adp-ribosylation factor Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012064.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase
XP_002287036.1
  • responsible for the synthesis of core1 structure of O-glycans;no EST support

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012064.1 Reference assembly

    Range
    2683392..2684159 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002287000.1 → XP_002287036.1  UDP-galactose:N-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002287036.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BS86
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials