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TAL1_1 transaldolase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7452450, updated on 21-Dec-2023

Summary

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Gene symbol
TAL1_1
Gene description
transaldolase
Locus tag
THAPSDRAFT_27187
Gene type
protein coding
RNA name
transaldolase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See TAL1_1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_012065.1 (1789185..1790981)

Chromosome 2 - NC_012065.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene WD40-repeat protein Neighboring gene hypothetical protein Neighboring gene metalloprotease

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012065.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transaldolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pentose-phosphate shunt IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pentose-phosphate shunt, non-oxidative branch IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
transaldolase
XP_002287454.1
  • Reaction catalyzed:sedoheptulose 7-phosphate + D-glyceraldehyde 3-phosphate = D-erythrose 4-phosphate + D-fructose 6-phosphate; putative

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012065.1 Reference assembly

    Range
    1789185..1790981
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002287418.1 → XP_002287454.1  transaldolase [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002287454.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BVA0
    Conserved Domains (2) summary
    PRK05269
    Location:1 → 312
    PRK05269; transaldolase B; Provisional
    PTZ00411
    Location:1 → 312
    PTZ00411; transaldolase-like protein; Provisional
Nucleotide Protein
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Research Materials