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atpA mitochondrial ATPase, inner membrane [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7452400, updated on 21-Dec-2023

Summary

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Gene symbol
atpA
Gene description
mitochondrial ATPase, inner membrane
Locus tag
THAPSDRAFT_269322
Gene type
protein coding
RNA name
mitochondrial ATPase, inner membrane
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See atpA in Genome Data Viewer
Location:
chromosome: 8
Exon count:
2
Sequence:
Chromosome: 8; NC_012071.1 (76344..78727)

Chromosome 8 - NC_012071.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012071.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables proton-transporting ATP synthase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proton motive force-driven ATP synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of proton-transporting ATP synthase complex, catalytic core F(1) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
mitochondrial ATPase, inner membrane
XP_002291694.1
  • Involved in respiratory ATP synthesis, inner membrane proteinNote: mt-encoded in many plants an algae, inferred from the surrounding genes it is nuclear encoded in T. pseudonana.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012071.1 Reference assembly

    Range
    76344..78727
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002291658.1 → XP_002291694.1  mitochondrial ATPase, inner membrane [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002291694.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C6C6
    Conserved Domains (4) summary
    PRK09281
    Location:40 → 542
    PRK09281; F0F1 ATP synthase subunit alpha; Validated
    cd01132
    Location:131 → 406
    F1_ATPase_alpha; F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to ...
    pfam00306
    Location:415 → 504
    ATP-synt_ab_C; ATP synthase alpha/beta chain, C terminal domain
    pfam02874
    Location:63 → 129
    ATP-synt_ab_N; ATP synthase alpha/beta family, beta-barrel domain
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials