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HBP1 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7452372, updated on 21-Dec-2023

Summary

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Gene symbol
HBP1
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_263463
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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Location:
chromosome: 8
Exon count:
1
Sequence:
Chromosome: 8; NC_012071.1 (1145153..1145428, complement)

Chromosome 8 - NC_012071.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012071.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_002292139.1
  • homeobox protein similarity, DNA binding, transcription factor; homeobox protein similarity, DNA binding, transcription factor

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012071.1 Reference assembly

    Range
    1145153..1145428 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002292103.1 → XP_002292139.1  hypothetical protein THAPSDRAFT_263463, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002292139.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C7J2
    Conserved Domains (1) summary
    pfam05920
    Location:52 → 91
    Homeobox_KN; Homeobox KN domain
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials