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THAPSDRAFT_261541 ribonuceoprotein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7452352, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_261541
Gene description
ribonuceoprotein
Locus tag
THAPSDRAFT_261541
Gene type
protein coding
RNA name
ribonuceoprotein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_261541 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_012065.1 (2058764..2060187, complement)

Chromosome 2 - NC_012065.1Genomic Context describing neighboring genes Neighboring gene geranylgeranyl diphosphate synthase Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012065.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
ribonuceoprotein
XP_002288032.1
  • putative RNA binding protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012065.1 Reference assembly

    Range
    2058764..2060187 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002287996.1 → XP_002288032.1  ribonuceoprotein, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002288032.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BVK1
    Conserved Domains (3) summary
    cd12361
    Location:100 → 176
    RRM1_2_CELF1-6_like; RNA recognition motif 1 and 2 in CELF/Bruno-like family of RNA binding proteins and plant flowering time control protein FCA
    cd12362
    Location:281 → 353
    RRM3_CELF1-6; RNA recognition motif 3 in CELF/Bruno-like family of RNA binding proteins CELF1, CELF2, CELF3, CELF4, CELF5, CELF6 and similar proteins
    TIGR01661
    Location:4 → 355
    ELAV_HUD_SF; ELAV/HuD family splicing factor
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials