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THAPSDRAFT_33205 K transporter [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7452116, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_33205
Gene description
K transporter
Locus tag
THAPSDRAFT_33205
Gene type
protein coding
RNA name
K transporter
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_33205 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Sequence:
Chromosome: 3; NC_012066.1 (2196698..2197741, complement)

Chromosome 3 - NC_012066.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012066.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables antiporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
K transporter
XP_002289064.1
  • poorly aligned but recognisable, no EST support, clearly most similar to a homologue from a cryptomonad, thus indicating secondary gene transfer from the nucleomorph to the diatom nucleus

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012066.1 Reference assembly

    Range
    2196698..2197741 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002289028.1 → XP_002289064.1  K transporter, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002289064.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BWE2
    Conserved Domains (1) summary
    cl01133
    Location:12 → 285
    Na_H_Exchanger; Sodium/hydrogen exchanger family
Nucleotide Protein
Heading Accession and Version

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