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Lhca6 member of fucoxanthin chlorophyll a/c family, lhca clade [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7452050, updated on 21-Dec-2023

Summary

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Gene symbol
Lhca6
Gene description
member of fucoxanthin chlorophyll a/c family, lhca clade
Locus tag
THAPSDRAFT_3815
Gene type
protein coding
RNA name
member of fucoxanthin chlorophyll a/c family, lhca clade
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See Lhca6 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_012066.1 (1870428..1871300, complement)

Chromosome 3 - NC_012066.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene fucoxanthin chl a/c light-harvesting protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012066.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in photosynthesis, light harvesting in photosystem I IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to light stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
member of fucoxanthin chlorophyll a/c family, lhca clade
XP_002289005.1
  • High sequence relatedness to red algal sequences

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012066.1 Reference assembly

    Range
    1870428..1871300 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002288969.1 → XP_002289005.1  member of fucoxanthin chlorophyll a/c family, lhca clade [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002289005.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BYV3
    Conserved Domains (1) summary
    pfam00504
    Location:68 → 198
    Chloroa_b-bind; Chlorophyll A-B binding protein
Nucleotide Protein
Heading Accession and Version

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