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THAPSDRAFT_37748 nuclear vcp-like-like protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7451886, updated on 18-Sep-2024

Summary

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Gene symbol
THAPSDRAFT_37748
Gene description
nuclear vcp-like-like protein
Locus tag
THAPSDRAFT_37748
Gene type
protein coding
RNA name
nuclear vcp-like-like protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_37748 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
4
Sequence:
Chromosome: 15; NC_012078.1 (355284..357313, complement)

Chromosome 15 - NC_012078.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene trypsin-like serine protease Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012078.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables preribosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
nuclear vcp-like-like protein
XP_002294217.1
  • Some similarity to other organisms (54% amino acid identity); Supporting EST data; contains conserved AAA domain (IPR003959), ATPases associated with variuos cellular activities.; nuclear valosin-containing protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012078.1 Reference assembly

    Range
    355284..357313 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002294181.1 → XP_002294217.1  nuclear vcp-like-like protein, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002294217.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CDA1
    Conserved Domains (2) summary
    COG0464
    Location:17 → 591
    SpoVK; AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms]
    pfam00004
    Location:359 → 492
    AAA; ATPase family associated with various cellular activities (AAA)
Nucleotide Protein
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