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THAPSDRAFT_15093 serine carboxypeptidase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7451871, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_15093
Gene description
serine carboxypeptidase
Locus tag
THAPSDRAFT_15093
Gene type
protein coding
RNA name
serine carboxypeptidase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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Location:
chromosome: 19, map: unlocalized
Exon count:
4

NW_002243510.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene glutmatae dehydrogenase, nadp-gdh

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_002243510.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type carboxypeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
serine carboxypeptidase
XP_002297156.1
  • Putative serine carboxypeptidase with similarity to gi|1705669|sp|P52710|CBPY_PICPA Carboxypeptidase Y precursor (Carboxypeptidase YSCY) (model%: 98, hit%: 73, score: 748, %id: 40) [Pichia pastoris]; EST support

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_002243510.1 Reference assembly

    Range
    67345..68903
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002297120.1 → XP_002297156.1  serine carboxypeptidase, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002297156.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8LDQ8
    Conserved Domains (1) summary
    cl08270
    Location:1 → 396
    Peptidase_S10; Serine carboxypeptidase
Nucleotide Protein
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