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THAPSDRAFT_11341 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7451831, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_11341
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_11341
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_11341 in Genome Data Viewer
Location:
chromosome: 19, map: unlocalized
Exon count:
1

NW_002243510.1Genomic Context describing neighboring genes Neighboring gene signal peptidase Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_002243510.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_002243510.1 Reference assembly

    Range
    85498..86679 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002297166.1 → XP_002297202.1  predicted protein [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002297202.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8LDR5
    Conserved Domains (2) summary
    cd00609
    Location:52 → 376
    AAT_like; Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine ...
    COG0436
    Location:56 → 382
    AspB; Aspartate/methionine/tyrosine aminotransferase [Amino acid transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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