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THAPSDRAFT_262412 protease of the insulinase family [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7451728, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_262412
Gene description
protease of the insulinase family
Locus tag
THAPSDRAFT_262412
Gene type
protein coding
RNA name
protease of the insulinase family
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_012068.1 (331644..334800)

Chromosome 5 - NC_012068.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene phosphatase of serine threonine protein phosphatase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012068.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis involved in protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
protease of the insulinase family
XP_002290089.1
  • sequence similarity and presence of insulinase domain suggests this is a putative protease

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012068.1 Reference assembly

    Range
    331644..334800
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002290053.1 → XP_002290089.1  protease of the insulinase family, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002290089.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C1X3
    Conserved Domains (4) summary
    COG1025
    Location:2 → 907
    Ptr; Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
    pfam00675
    Location:22 → 157
    Peptidase_M16; Insulinase (Peptidase family M16)
    pfam05193
    Location:189 → 378
    Peptidase_M16_C; Peptidase M16 inactive domain
    pfam16187
    Location:387 → 666
    Peptidase_M16_M; Middle or third domain of peptidase_M16
Nucleotide Protein
Heading Accession and Version

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