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BAT1 branched-chain amino acid aminotransferase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7451691, updated on 21-Dec-2023

Summary

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Gene symbol
BAT1
Gene description
branched-chain amino acid aminotransferase
Locus tag
THAPSDRAFT_33194
Gene type
protein coding
RNA name
branched-chain amino acid aminotransferase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See BAT1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_012066.1 (1165632..1167659)

Chromosome 3 - NC_012066.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene trypsin-like serine protease Neighboring gene sec14p-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012066.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carboxylic acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
branched-chain amino acid aminotransferase
XP_002288370.1
  • Sequence similarity is strong in about half of the gene.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012066.1 Reference assembly

    Range
    1165632..1167659
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002288334.1 → XP_002288370.1  branched-chain amino acid aminotransferase, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002288370.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BY14
    Conserved Domains (2) summary
    pfam13469
    Location:10 → 186
    Sulfotransfer_3; Sulfotransferase family
    cl00224
    Location:308 → 588
    PLPDE_IV; PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate ...
Nucleotide Protein
Heading Accession and Version

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