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THAPSDRAFT_37493 formyltetrahydrofolate deformylase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7451631, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_37493
Gene description
formyltetrahydrofolate deformylase
Locus tag
THAPSDRAFT_37493
Gene type
protein coding
RNA name
formyltetrahydrofolate deformylase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_37493 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
2
Sequence:
Chromosome: 14; NC_012077.1 (128383..129353)

Chromosome 14 - NC_012077.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012077.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables formyltetrahydrofolate deformylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in 'de novo' IMP biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
formyltetrahydrofolate deformylase
XP_002293678.1
  • EST evidence from Phaeodactylum. Good hits to other formyltetrahydrofolate deformylases including Synechocystis. This is the only good hit to an enzyme that catalyzes the formation of formate from N-formyl derivatives.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012077.1 Reference assembly

    Range
    128383..129353
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002293642.1 → XP_002293678.1  formyltetrahydrofolate deformylase, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002293678.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CC12
    Conserved Domains (3) summary
    cd08648
    Location:89 → 284
    FMT_core_Formyl-FH4-Hydrolase_C; Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain
    PRK06027
    Location:1 → 285
    purU; formyltetrahydrofolate deformylase; Reviewed
    cl09141
    Location:2 → 78
    ACT; ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme
Nucleotide Protein
Heading Accession and Version

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