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THAPSDRAFT_31394 aspartate aminotransferase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7451537, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_31394
Gene description
aspartate aminotransferase
Locus tag
THAPSDRAFT_31394
Gene type
protein coding
RNA name
aspartate aminotransferase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_012064.1 (314452..315885)

Chromosome 1 - NC_012064.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012064.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L,L-diaminopimelate aminotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lysine biosynthetic process via diaminopimelate IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
aspartate aminotransferase
XP_002285992.1
  • I got to this annotation as one of seven of the aspartate aminotransferases called by grail/genewise. There appears to be high similarity to other putative aspartate aminotransferases in Arabidopsis, but there is no EST support for this assignment.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012064.1 Reference assembly

    Range
    314452..315885
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002285956.1 → XP_002285992.1  aspartate aminotransferase [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002285992.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BT02
    Conserved Domains (2) summary
    cd00609
    Location:41 → 406
    AAT_like; Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine ...
    PRK07590
    Location:6 → 408
    PRK07590; L,L-diaminopimelate aminotransferase; Validated
Nucleotide Protein
Heading Accession and Version

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