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THAPSDRAFT_260943 transcription factor of TFIIH family [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7451475, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_260943
Gene description
transcription factor of TFIIH family
Locus tag
THAPSDRAFT_260943
Gene type
protein coding
RNA name
transcription factor of TFIIH family
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_012064.1 (1450527..1452071)

Chromosome 1 - NC_012064.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012064.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIIH core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription factor TFIIH holo complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
transcription factor of TFIIH family
XP_002286215.1
  • sequence similarity and presence of transcription factor Tfb2 domain

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012064.1 Reference assembly

    Range
    1450527..1452071
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002286179.1 → XP_002286215.1  transcription factor of TFIIH family, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002286215.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BQW1
    Conserved Domains (1) summary
    pfam03849
    Location:3 → 401
    Tfb2; Transcription factor Tfb2
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials