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THAPSDRAFT_12810 importin beta-1 subunit-like protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7451373, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_12810
Gene description
importin beta-1 subunit-like protein
Locus tag
THAPSDRAFT_12810
Gene type
protein coding
RNA name
importin beta-1 subunit-like protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_12810 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Sequence:
Chromosome: 4; NC_012067.1 (2082843..2085245, complement)

Chromosome 4 - NC_012067.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene RL30, ribosomal protein 30 60S large ribosomal subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012067.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear import signal receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear localization sequence binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein import into nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
importin beta-1 subunit-like protein
XP_002289979.1
  • contains conserved importin-beta N terminal domain (IPR001494). stong sequence alignment with beta importin in Arabidopsis.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012067.1 Reference assembly

    Range
    2082843..2085245 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002289943.1 → XP_002289979.1  importin beta-1 subunit-like protein, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002289979.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C0H0
    Conserved Domains (4) summary
    COG5215
    Location:15 → 801
    KAP95; Karyopherin (importin) beta [Intracellular trafficking and secretion]
    pfam03810
    Location:35 → 96
    IBN_N; Importin-beta N-terminal domain
    pfam13513
    Location:390 → 445
    HEAT_EZ; HEAT-like repeat
    sd00044
    Location:332 → 364
    HEAT; HEAT repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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