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ELO1 probable microsomal very long chain fatty acid elongase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7451336, updated on 21-Dec-2023

Summary

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Gene symbol
ELO1
Gene description
probable microsomal very long chain fatty acid elongase
Locus tag
THAPSDRAFT_3741
Gene type
protein coding
RNA name
probable microsomal very long chain fatty acid elongase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See ELO1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_012066.1 (1698731..1699691)

Chromosome 3 - NC_012066.1Genomic Context describing neighboring genes Neighboring gene rna-binding protein Neighboring gene phenylalanyl-trna synthetase Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012066.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables fatty acid elongase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid elongation, monounsaturated fatty acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid elongation, polyunsaturated fatty acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid elongation, saturated fatty acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in very long-chain fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
probable microsomal very long chain fatty acid elongase
XP_002288481.1
  • May catalyse the carboxyl-end addition of 2 carbons to long chain fatty acids. Microsomal membrane bound.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012066.1 Reference assembly

    Range
    1698731..1699691
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002288445.1 → XP_002288481.1  probable microsomal very long chain fatty acid elongase [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002288481.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BYM9, Q5SE76
    Conserved Domains (1) summary
    pfam01151
    Location:32 → 271
    ELO; GNS1/SUR4 family
Nucleotide Protein
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