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THAPSDRAFT_33046 phenylalanyl-trna synthetase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7451335, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_33046
Gene description
phenylalanyl-trna synthetase
Locus tag
THAPSDRAFT_33046
Gene type
protein coding
RNA name
phenylalanyl-trna synthetase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_012066.1 (1696534..1698474, complement)

Chromosome 3 - NC_012066.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene rna-binding protein Neighboring gene hypothetical protein Neighboring gene probable microsomal very long chain fatty acid elongase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012066.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phenylalanine-tRNA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phenylalanyl-tRNA aminoacylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of phenylalanine-tRNA ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
phenylalanyl-trna synthetase
XP_002288966.1
  • Strong similarity to other organisms (50% amino acid identity); contains conserved phenylalanyl-tRNA synthetase beta subunit archae/euk cytosolic domain (IPR004531); function: catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012066.1 Reference assembly

    Range
    1696534..1698474 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002288930.1 → XP_002288966.1  phenylalanyl-trna synthetase [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002288966.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BYM8
    Conserved Domains (4) summary
    smart00873
    Location:124 → 291
    B3_4; B3/4 domain
    PLN02265
    Location:1 → 620
    PLN02265; probable phenylalanyl-tRNA synthetase beta chain
    cd00769
    Location:415 → 619
    PheRS_beta_core; Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an ...
    pfam03484
    Location:327 → 397
    B5; tRNA synthetase B5 domain
Nucleotide Protein
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