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THAPSDRAFT_27564 chorismate mutase-like protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7451317, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_27564
Gene description
chorismate mutase-like protein
Locus tag
THAPSDRAFT_27564
Gene type
protein coding
RNA name
chorismate mutase-like protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_27564 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Sequence:
Chromosome: 3; NC_012066.1 (1605175..1606329)

Chromosome 3 - NC_012066.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012066.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chorismate mutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in aromatic amino acid family biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chorismate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
chorismate mutase-like protein
XP_002288463.1
  • addition to previous annotation: N-terminus (extended, see gene model comment) contains putative ER signal peptide predicted by SignalP (probability 0.996; cleavage site between pos. 21 and 22: CGA-YS) followed by putative chloroplast transit peptide predicted by TargetP (probability 0.717, length 22 aa). Protein is putatively chloroplast targeted.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012066.1 Reference assembly

    Range
    1605175..1606329
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002288427.1 → XP_002288463.1  chorismate mutase-like protein, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002288463.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BYJ2
    Conserved Domains (1) summary
    PLN02344
    Location:1 → 307
    PLN02344; chorismate mutase
Nucleotide Protein
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