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THAPSDRAFT_264188 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7451263, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_264188
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_264188
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_264188 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
8
Sequence:
Chromosome: 14; NC_012077.1 (652500..655999)

Chromosome 14 - NC_012077.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012077.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_002293782.1
  • Putative protein of unknown function containing a metalloprotease domain, similar to gi|21301112|gb|EAA13257.1| ebiP3474 [Anopheles gambiae str. PEST] (model%: 100, hit%: 96, score: 1265, %id: 33) [Anopheles gambiae str. PEST]; EST support; putative protein of unknown function containing a metalloprotease domain

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012077.1 Reference assembly

    Range
    652500..655999
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002293746.1 → XP_002293782.1  hypothetical protein THAPSDRAFT_264188, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002293782.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CCK5
    Conserved Domains (4) summary
    COG1026
    Location:1 → 960
    Cym1; Zn-dependent peptidase, M16 (insulinase) family [Posttranslational modification, protein turnover, chaperones]
    pfam00675
    Location:35 → 112
    Peptidase_M16; Insulinase (Peptidase family M16)
    pfam05193
    Location:185 → 364
    Peptidase_M16_C; Peptidase M16 inactive domain
    pfam08367
    Location:453 → 580
    M16C_assoc; Peptidase M16C associated
Nucleotide Protein
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