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clpP catalytic subunit of clp protease [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7451052, updated on 21-Dec-2023

Summary

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Gene symbol
clpP
Gene description
catalytic subunit of clp protease
Locus tag
THAPSDRAFT_36350
Gene type
protein coding
RNA name
catalytic subunit of clp protease
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See clpP in Genome Data Viewer
Location:
chromosome: 10
Exon count:
2
Sequence:
Chromosome: 10; NC_012073.1 (229486..230231)

Chromosome 10 - NC_012073.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012073.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP-dependent peptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein quality control for misfolded or incompletely synthesized proteins IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of endopeptidase Clp complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
catalytic subunit of clp protease
XP_002292583.1
  • probably plastid clp protease subunit, most similar to G.theta nucleomorph homologue indicating secodnary gene transfer

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012073.1 Reference assembly

    Range
    229486..230231
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002292547.1 → XP_002292583.1  catalytic subunit of clp protease [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002292583.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C929
    Conserved Domains (1) summary
    CHL00028
    Location:1 → 199
    clpP; ATP-dependent Clp protease proteolytic subunit
Nucleotide Protein
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Research Materials