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THAPS_38187 metacaspase-like protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7450918, updated on 21-Dec-2023

Summary

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Gene symbol
THAPS_38187
Gene description
metacaspase-like protein
Locus tag
THAPS_38187
Gene type
protein coding
RNA name
metacaspase-like protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPS_38187 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
1
Sequence:
Chromosome: 18; NC_012081.1 (10990..11466)

Chromosome 18 - NC_012081.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012081.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
metacaspase-like protein
XP_002295354.1
  • Putative protein with similarities to Metacaspase (model%: 21, hit%: 28, score: 285, %id: 42) [Schizosaccharomyces pombe]; EST support

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012081.1 Reference assembly

    Range
    10990..11466
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002295318.1 → XP_002295354.1  metacaspase-like protein, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002295354.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B5YLF1
    Conserved Domains (1) summary
    pfam00656
    Location:11 → 159
    Peptidase_C14; Caspase domain
Nucleotide Protein
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