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Lhcf10 fucoxanthin chl a/c light-harvesting protein, major type [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7450877, updated on 21-Dec-2023

Summary

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Gene symbol
Lhcf10
Gene description
fucoxanthin chl a/c light-harvesting protein, major type
Locus tag
THAPS_25402
Gene type
protein coding
RNA name
fucoxanthin chl a/c light-harvesting protein, major type
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See Lhcf10 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
3
Sequence:
Chromosome: 18; NC_012081.1 (619411..620538, complement)

Chromosome 18 - NC_012081.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene possible amino acid/polyamine transporter family II Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012081.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in photosynthesis, light harvesting in photosystem I IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to light stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
fucoxanthin chl a/c light-harvesting protein, major type

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012081.1 Reference assembly

    Range
    619411..620538 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002295583.1 → XP_002295619.1  fucoxanthin chl a/c light-harvesting protein, major type [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002295619.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B5YM25
    Conserved Domains (1) summary
    cl02879
    Location:23 → 188
    Chloroa_b-bind; Chlorophyll A-B binding protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials