U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ASA aspartate-ammonia ligase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7450869, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
ASA
Gene description
aspartate-ammonia ligase
Locus tag
THAPSDRAFT_24816
Gene type
protein coding
RNA name
aspartate-ammonia ligase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 14
Exon count:
2
Sequence:
Chromosome: 14; NC_012077.1 (351049..352642, complement)

Chromosome 14 - NC_012077.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene sterol-c-methyltransferase Neighboring gene chromosome condensation protein-like protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_012077.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables aspartate-ammonia ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in asparagine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Names
aspartate-ammonia ligase
XP_002293912.1
  • The enzyme encoded by this gene likely catalyzed the synthesis of L-asparagine from L-aspartate. This form of the enzyme is ammonia-dependent rather than glutamine-dependent. There is high identity (52%) and similarity (66%) to a bacterial (Clostridium perfingens) sequence for this gene. There are no goods hits to Plasmodium, Synechocystis Anabaena, Thermosynechococcus, and Arabidopsis.; ammonia-dependent asparagine synthetase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012077.1 Reference assembly

    Range
    351049..352642 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002293876.1 → XP_002293912.1  aspartate-ammonia ligase [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002293912.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CCA0
    Conserved Domains (1) summary
    PRK05425
    Location:24 → 342
    PRK05425; asparagine synthetase AsnA; Provisional
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials