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THAPSDRAFT_42320 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7450837, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_42320
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_42320
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_42320 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
3
Sequence:
Chromosome: 14; NC_012077.1 (176133..177214)

Chromosome 14 - NC_012077.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene eukaryotic translation initiation factor 4A Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012077.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in late endosome to vacuole transport via multivesicular body sorting pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle budding from membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in multivesicular body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_002293691.1
  • cDNA evidence for this protein in Arabidopsis; conserved unknown protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012077.1 Reference assembly

    Range
    176133..177214
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002293655.1 → XP_002293691.1  hypothetical protein THAPSDRAFT_42320 [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002293691.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CC34
    Conserved Domains (1) summary
    cl21588
    Location:1 → 222
    Snf7; Snf7
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases
Research Materials