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THAPSDRAFT_24097 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7450796, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_24097
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_24097
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_24097 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
4
Sequence:
Chromosome: 10; NC_012073.1 (70110..75581)

Chromosome 10 - NC_012073.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012073.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of Rab protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012073.1 Reference assembly

    Range
    70110..75581
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002292522.1 → XP_002292558.1  predicted protein [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002292558.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C8Y1
    Conserved Domains (5) summary
    smart00801
    Location:912 → 982
    dDENN; Domain always found downstream of DENN domain, found in a variety of signalling proteins
    TIGR00756
    Location:1358 → 1390
    PPR; pentatricopeptide repeat domain (PPR motif)
    sd00004
    Location:1356 → 1385
    PPR; PPR repeat [structural motif]
    pfam02141
    Location:579 → 786
    DENN; DENN (AEX-3) domain
    pfam03456
    Location:428 → 506
    uDENN; uDENN domain
Nucleotide Protein
Heading Accession and Version

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