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THAPSDRAFT_263745 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7450786, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_263745
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_263745
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_263745 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
3
Sequence:
Chromosome: 10; NC_012073.1 (1079043..1079787, complement)

Chromosome 10 - NC_012073.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012073.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3',5'-cyclic-nucleotide phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_002292938.1
  • Retinal 3',5'-cGMP phosphodiesterase (PDE) is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion.; hypothetical protein with some similarity to cyclic nucleotide phosphodiesterases

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012073.1 Reference assembly

    Range
    1079043..1079787 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002292902.2 → XP_002292938.1  hypothetical protein THAPSDRAFT_263745 [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002292938.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C8W4
    Conserved Domains (1) summary
    cl21469
    Location:32 → 120
    HDc; Metal dependent phosphohydrolases with conserved 'HD' motif
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials