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THAPSDRAFT_36456 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7450782, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_36456
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_36456
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_36456 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
1
Sequence:
Chromosome: 10; NC_012073.1 (1059473..1060138)

Chromosome 10 - NC_012073.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene RS2, ribosomal protein 2 Neighboring gene hypothetical protein Neighboring gene probable purine-nucleoside phosphorylase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012073.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation initiation factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in formation of cytoplasmic translation initiation complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in formation of translation preinitiation complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translational initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of eukaryotic translation initiation factor 2 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012073.1 Reference assembly

    Range
    1059473..1060138
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002292709.1 → XP_002292745.1  predicted protein [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002292745.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C8V9
    Conserved Domains (1) summary
    pfam01873
    Location:83 → 195
    eIF-5_eIF-2B; Domain found in IF2B/IF5
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials