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THAPSDRAFT_36310 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7450767, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_36310
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_36310
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_36310 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
4
Sequence:
Chromosome: 10; NC_012073.1 (945371..946945, complement)

Chromosome 10 - NC_012073.1Genomic Context describing neighboring genes Neighboring gene probable signal peptidase Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene meiotic check point regulator-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012073.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in CAAX-box protein processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012073.1 Reference assembly

    Range
    945371..946945 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002292880.1 → XP_002292916.1  predicted protein, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002292916.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C8S3
    Conserved Domains (3) summary
    COG0501
    Location:152 → 425
    HtpX; Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
    pfam01435
    Location:210 → 416
    Peptidase_M48; Peptidase family M48
    pfam16491
    Location:24 → 207
    Peptidase_M48_N; CAAX prenyl protease N-terminal, five membrane helices
Nucleotide Protein
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Molecular Biology Databases
Research Materials