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THAPS_29008 bifunctional aspartokinase/homoserine dehydrogenase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7450716, updated on 21-Dec-2023

Summary

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Gene symbol
THAPS_29008
Gene description
bifunctional aspartokinase/homoserine dehydrogenase
Locus tag
THAPS_29008
Gene type
protein coding
RNA name
bifunctional aspartokinase/homoserine dehydrogenase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPS_29008 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
4
Sequence:
Chromosome: 7; NC_012070.1 (1573190..1576365, complement)

Chromosome 7 - NC_012070.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene rab-type small GTPase Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012070.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables aspartate kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables homoserine dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in aspartate family amino acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homoserine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
bifunctional aspartokinase/homoserine dehydrogenase
XP_002296299.1
  • Matches to ESTs from other diatoms. Strongest alignments are to chloroplast precursors for this enzyme from corn and rice. High scores for matches with Arabidopsis as well.; akhsdh

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012070.1 Reference assembly

    Range
    1573190..1576365 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002296263.1 → XP_002296299.1  bifunctional aspartokinase/homoserine dehydrogenase [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002296299.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B5YNN0
    Conserved Domains (6) summary
    cd04921
    Location:415 → 494
    ACT_AKi-HSDH-ThrA-like_1; ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)
    PRK09436
    Location:90 → 928
    thrA; bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
    pfam00742
    Location:727 → 925
    Homoserine_dh; Homoserine dehydrogenase
    cl00452
    Location:90 → 378
    AAK; Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that ...
    cl09141
    Location:497 → 560
    ACT; ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme
    cl21454
    Location:574 → 712
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
Nucleotide Protein
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