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THAPS_269276 hypothetical RNA binding protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7450689, updated on 21-Dec-2023

Summary

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Gene symbol
THAPS_269276
Gene description
hypothetical RNA binding protein
Locus tag
THAPS_269276
Gene type
protein coding
RNA name
hypothetical RNA binding protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPS_269276 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
1
Sequence:
Chromosome: 7; NC_012070.1 (1439009..1440666, complement)

Chromosome 7 - NC_012070.1Genomic Context describing neighboring genes Neighboring gene SIR2-like transcriptional regulatory protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012070.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical RNA binding protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012070.1 Reference assembly

    Range
    1439009..1440666 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002296241.1 → XP_002296277.1  hypothetical RNA binding protein [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002296277.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B5YNI2
    Conserved Domains (1) summary
    cd02409
    Location:47 → 98
    KH-II; KH-II (K homology RNA-binding domain, type II). KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins (e.g. ribosomal protein S3), transcription factors (e.g. NusA_K), and post-transcriptional ...
Nucleotide Protein
Heading Accession and Version

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