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THAPS_13175 ABC transporter, ATP binding protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7450640, updated on 21-Dec-2023

Summary

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Gene symbol
THAPS_13175
Gene description
ABC transporter, ATP binding protein
Locus tag
THAPS_13175
Gene type
protein coding
RNA name
ABC transporter, ATP binding protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPS_13175 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
7
Sequence:
Chromosome: 7; NC_012070.1 (121587..123765)

Chromosome 7 - NC_012070.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012070.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
ABC transporter, ATP binding protein
XP_002295674.1
  • ABC transporter, ATP binding protein. Location unknown.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012070.1 Reference assembly

    Range
    121587..123765
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002295638.1 → XP_002295674.1  ABC transporter, ATP binding protein, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002295674.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B5YP44
    Conserved Domains (3) summary
    cd03223
    Location:334 → 542
    ABCD_peroxisomal_ALDP; ATP-binding cassette domain of peroxisomal transporter, subfamily D
    COG1132
    Location:1 → 537
    MdlB; ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]
    cl00549
    Location:2 → 258
    ABC_membrane; ABC transporter transmembrane region
Nucleotide Protein
Heading Accession and Version

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