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THAPS_263277 transmembrane protein with sterol-regulatory element binding domain [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7450585, updated on 21-Dec-2023

Summary

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Gene symbol
THAPS_263277
Gene description
transmembrane protein with sterol-regulatory element binding domain
Locus tag
THAPS_263277
Gene type
protein coding
RNA name
transmembrane protein with sterol-regulatory element binding domain
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPS_263277 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
1
Sequence:
Chromosome: 7; NC_012070.1 (1722715..1723173, complement)

Chromosome 7 - NC_012070.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene glycosylase Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012070.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
transmembrane protein with sterol-regulatory element binding domain
XP_002296322.1
  • based on sequence similarity to bacterial proteins and presence of SREBP domain,which in mammalian cells indicates role in fatty acid metabolism

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012070.1 Reference assembly

    Range
    1722715..1723173 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002296286.1 → XP_002296322.1  transmembrane protein with sterol-regulatory element binding domain, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002296322.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B5YNS9
    Conserved Domains (1) summary
    cl10020
    Location:36 → 153
    S2P-M50; Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of this family use proteolytic ...
Nucleotide Protein
Heading Accession and Version

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