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THAPS_41425 cytosolic malate dehydrogenase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7450578, updated on 26-Jun-2024

Summary

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Gene symbol
THAPS_41425
Gene description
cytosolic malate dehydrogenase
Locus tag
THAPS_41425
Gene type
protein coding
RNA name
cytosolic malate dehydrogenase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPS_41425 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
1
Sequence:
Chromosome: 7; NC_012070.1 (1677378..1678600, complement)

Chromosome 7 - NC_012070.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012070.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-malate dehydrogenase (NAD+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in NADH metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in malate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oxaloacetate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
cytosolic malate dehydrogenase
XP_002296311.1
  • cytosolic malate dehydrogenase. [catalytic activty](S)-malate + NAD(+) = oxaloacetate + NADH.[SUBUNIT] Homodimer (By similarity). [SUBCELLULAR LOCATION] Cytoplasmic (By similarity). [SIMILARITY] BELONGS TO THE LDH FAMILY. MDH SUBFAMILY.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012070.1 Reference assembly

    Range
    1677378..1678600 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002296275.1 → XP_002296311.1  cytosolic malate dehydrogenase [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002296311.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B5YNR1
    Conserved Domains (2) summary
    TIGR01759
    Location:9 → 334
    MalateDH-SF1; malate dehydrogenase
    cd01336
    Location:6 → 335
    MDH_cytoplasmic_cytosolic; Cytoplasmic and cytosolic Malate dehydrogenases
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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