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THAPSDRAFT_12292 ABC transporter, MRP family [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7450518, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_12292
Gene description
ABC transporter, MRP family
Locus tag
THAPSDRAFT_12292
Gene type
protein coding
RNA name
ABC transporter, MRP family
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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Location:
chromosome: 13
Exon count:
2
Sequence:
Chromosome: 13; NC_012076.1 (910107..913703, complement)

Chromosome 13 - NC_012076.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene signal recognition particle-like protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012076.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
ABC transporter, MRP family
XP_002293642.1
  • ABC transporter, possibly for metal detoxification or drug efflux

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012076.1 Reference assembly

    Range
    910107..913703 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002293606.1 → XP_002293642.1  ABC transporter, MRP family, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002293642.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CBU2
    Conserved Domains (5) summary
    cd03244
    Location:923 → 1143
    ABCC_MRP_domain2; ATP-binding cassette domain 2 of multidrug resistance-associated protein
    cd03250
    Location:281 → 489
    ABCC_MRP_domain1; ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C
    COG0410
    Location:925 → 1150
    LivF; ABC-type branched-chain amino acid transport system, ATPase component [Amino acid transport and metabolism]
    TIGR02857
    Location:2 → 485
    CydD; thiol reductant ABC exporter, CydD subunit
    cl00549
    Location:648 → 866
    ABC_membrane; ABC transporter transmembrane region
Nucleotide Protein
Heading Accession and Version

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