U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

THAPSDRAFT_24712 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7450504, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
THAPSDRAFT_24712
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_24712
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See THAPSDRAFT_24712 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
6
Sequence:
Chromosome: 13; NC_012076.1 (824896..832533, complement)

Chromosome 13 - NC_012076.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene phosphatase 2A (PP2A) regulatory subunit B-like protein-like protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_012076.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012076.1 Reference assembly

    Range
    824896..832533 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002293588.1 → XP_002293624.1  predicted protein [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002293624.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CBR0
    Conserved Domains (6) summary
    COG0513
    Location:1625 → 2106
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    COG3899
    Location:347 → 1218
    COG3899; Predicted ATPase [General function prediction only]
    cd00079
    Location:1920 → 2083
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    pfam13191
    Location:347 → 537
    AAA_16; AAA ATPase domain
    pfam13959
    Location:2187 → 2234
    DUF4217; Domain of unknown function (DUF4217)
    cl21455
    Location:1634 → 1875
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials