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THAPSDRAFT_261602 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7450486, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_261602
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_261602
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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Location:
chromosome: 2
Exon count:
5
Sequence:
Chromosome: 2; NC_012065.1 (2515987..2517311, complement)

Chromosome 2 - NC_012065.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012065.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables URM1 activating enzyme activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleotidyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables thiosulfate sulfurtransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_002288102.1
  • Putative protein of unknown function containing a rhodanese domain, such domains have been associated with plant senescence related proteins; similar to Molybdenum cofactor synthesis protein 3 (Molybdopterin synthase sulfurylase) (MPT synthase sulfurylase); see gi|22001817|sp|Q9ZNW0|MOC3_ARATH Molybdenum cofactor synthesis protein 3 (Molybdopterin synthase sulfurylase) (MPT synthase sulfurylase) (model%: 88, hit%: 86, score: 716, %id: 39) [Arabidopsis thaliana]; putative protein of unknown function containing a rhodanese domain, similar to molybdenum cofactor synthesis protein 3

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012065.1 Reference assembly

    Range
    2515987..2517311 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002288066.1 → XP_002288102.1  hypothetical protein THAPSDRAFT_261602, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002288102.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BVZ8
    Conserved Domains (3) summary
    PRK07411
    Location:3 → 388
    PRK07411; hypothetical protein; Validated
    cd00757
    Location:3 → 233
    ThiF_MoeB_HesA_family; ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD ...
    cl00125
    Location:272 → 388
    RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...
Nucleotide Protein
Heading Accession and Version

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