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THAPSDRAFT_268256 probable phosphoribosyl-amp cyclohydrolase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7450256, updated on 19-Jun-2024

Summary

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Gene symbol
THAPSDRAFT_268256
Gene description
probable phosphoribosyl-amp cyclohydrolase
Locus tag
THAPSDRAFT_268256
Gene type
protein coding
RNA name
probable phosphoribosyl-amp cyclohydrolase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_268256 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_012065.1 (942120..943318)

Chromosome 2 - NC_012065.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene RL14, ribosomal protein 14 60S large ribosomal subunit Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene probable 3-oxoacyl-reductase domain containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012065.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphoribosyl-AMP cyclohydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphoribosyl-ATP diphosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-histidine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
probable phosphoribosyl-amp cyclohydrolase
XP_002287285.1
  • Phosphoribosyl-ATP pyrophosphatase catalyses the second step in the histidine biosynthetic pathway: 5-phosphoribosyl-ATP + H2O = 5-phosphoribosyl-AMP + PPi

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012065.1 Reference assembly

    Range
    942120..943318
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002287249.1 → XP_002287285.1  probable phosphoribosyl-amp cyclohydrolase [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002287285.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BUA9
    Conserved Domains (3) summary
    cd11546
    Location:162 → 245
    NTP-PPase_His4; Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in His4-like fungal histidine biosynthesis trifunctional proteins and their homologs
    PLN02346
    Location:26 → 262
    PLN02346; histidine biosynthesis bifunctional protein hisIE
    pfam01502
    Location:82 → 158
    PRA-CH; Phosphoribosyl-AMP cyclohydrolase
Nucleotide Protein
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