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THAPSDRAFT_269348 inorganic pyrophosphatase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7450156, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_269348
Gene description
inorganic pyrophosphatase
Locus tag
THAPSDRAFT_269348
Gene type
protein coding
RNA name
inorganic pyrophosphatase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_269348 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
2
Sequence:
Chromosome: 8; NC_012071.1 (495519..496552)

Chromosome 8 - NC_012071.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012071.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables inorganic diphosphate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphate-containing compound metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
inorganic pyrophosphatase
XP_002291776.1
  • putative inorganic pyrophosphatase protein involved in oxidative phosphorylation based on sequence similarity, EST support and presence of defining domains

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012071.1 Reference assembly

    Range
    495519..496552
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002291740.1 → XP_002291776.1  inorganic pyrophosphatase [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002291776.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C6T9
    Conserved Domains (1) summary
    PLN02707
    Location:14 → 269
    PLN02707; Soluble inorganic pyrophosphatase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials