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THAPSDRAFT_268911 methyl transferase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7450096, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_268911
Gene description
methyl transferase
Locus tag
THAPSDRAFT_268911
Gene type
protein coding
RNA name
methyl transferase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_268911 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_012068.1 (1355523..1356384, complement)

Chromosome 5 - NC_012068.1Genomic Context describing neighboring genes Neighboring gene cyclic nucleotide and voltage-activated ion channel Neighboring gene serine or glycine-rich protein with nucleotide binding motif Neighboring gene hypothetical protein Neighboring gene thioredoxin

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012068.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables thiopurine S-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
methyl transferase
XP_002290733.1
  • Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented.

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012068.1 Reference assembly

    Range
    1355523..1356384 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002290697.1 → XP_002290733.1  methyl transferase [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002290733.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C323
    Conserved Domains (1) summary
    cl17173
    Location:9 → 246
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials