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THAPSDRAFT_7695 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7449845, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_7695
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_7695
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_7695 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
5
Sequence:
Chromosome: 8; NC_012071.1 (891407..898737)

Chromosome 8 - NC_012071.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012071.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012071.1 Reference assembly

    Range
    891407..898737
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002291820.1 → XP_002291856.1  predicted protein [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002291856.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C793
    Conserved Domains (6) summary
    cd00020
    Location:645 → 758
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    cd00116
    Location:1359 → 1621
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00031
    Location:1508 → 1533
    LRR_1; leucine-rich repeat [structural motif]
    sd00043
    Location:644 → 674
    ARM; armadillo repeat [structural motif]
    cd12885
    Location:48 → 178
    SPRY_RanBP_like; SPRY domain in Ran binding proteins, SSH4, HECT E3 and SPRYD3
    cl19248
    Location:1820 → 1940
    CHAT; CHAT domain
Nucleotide Protein
Heading Accession and Version

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