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THAPSDRAFT_41583 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7449814, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_41583
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_41583
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_41583 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
4
Sequence:
Chromosome: 8; NC_012071.1 (764247..765595)

Chromosome 8 - NC_012071.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012071.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_002291825.1
  • contains conserved G-protein WD-40 repeats (IPR001680).; similar to arabidopsis putative splicing factor, contains WD40 repeats

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012071.1 Reference assembly

    Range
    764247..765595
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002291789.1 → XP_002291825.1  hypothetical protein THAPSDRAFT_41583 [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002291825.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C737
    Conserved Domains (3) summary
    COG2319
    Location:16 → 337
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:36 → 331
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:44 → 81
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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