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THAPSDRAFT_5298 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7449599, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_5298
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_5298
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_5298 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_012068.1 (844161..849077)

Chromosome 5 - NC_012068.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012068.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ADP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012068.1 Reference assembly

    Range
    844161..849077
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002290168.1 → XP_002290204.1  predicted protein [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002290204.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C2I8
    Conserved Domains (7) summary
    smart00028
    Location:1053 → 1081
    TPR; Tetratricopeptide repeats
    COG0457
    Location:1162 → 1461
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:1053 → 1079
    TPR; TPR repeat [structural motif]
    cd15832
    Location:1214 → 1253
    SNAP; TPR repeat [structural motif]
    pfam13414
    Location:1053 → 1122
    TPR_11; TPR repeat
    pfam13424
    Location:1463 → 1569
    TPR_12; Tetratricopeptide repeat
    cl24038
    Location:1187 → 1338
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family
Nucleotide Protein
Heading Accession and Version

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