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THAPSDRAFT_32859 probable aspartyl aminopeptidase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7449571, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_32859
Gene description
probable aspartyl aminopeptidase
Locus tag
THAPSDRAFT_32859
Gene type
protein coding
RNA name
probable aspartyl aminopeptidase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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Location:
chromosome: 3
Exon count:
7
Sequence:
Chromosome: 3; NC_012066.1 (1841003..1842961, complement)

Chromosome 3 - NC_012066.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012066.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables aminopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
probable aspartyl aminopeptidase
XP_002289000.1
  • Probable aspartyl aminopeptidase (asp-apase) (aspartate aminopeptidase) similar to At5g60160-68299.m05969 F15L12.1 aspartyl aminopeptidase - like protein aspartyl aminopeptidase, Homo sapiens, EMBL:AF005050. (model%: 92, hit%: 95, score: 1038, %id: 46) [Arabidopsis thaliana]; EST support

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012066.1 Reference assembly

    Range
    1841003..1842961 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002288964.1 → XP_002289000.1  probable aspartyl aminopeptidase, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002289000.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BYU3
    Conserved Domains (1) summary
    cd05658
    Location:1 → 453
    M18_DAP; M18 Peptidase Aspartyl aminopeptidase
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases
Research Materials