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THAPSDRAFT_264862 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7449420, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_264862
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_264862
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_264862 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
3
Sequence:
Chromosome: 22; NC_012085.1 (873837..874833)

Chromosome 22 - NC_012085.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012085.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables fatty-acyl-CoA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_002294926.1
  • similar to acyl-CoA binding protein; hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012085.1 Reference assembly

    Range
    873837..874833
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002294890.2 → XP_002294926.1  hypothetical protein THAPSDRAFT_264862 [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002294926.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8CFX3
    Conserved Domains (4) summary
    cd00204
    Location:96 → 206
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam00887
    Location:18 → 90
    ACBP; Acyl CoA binding protein
    pfam12796
    Location:93 → 185
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:121 → 152
    ANK; ANK repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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