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THAPSDRAFT_23975 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7449329, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_23975
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_23975
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_23975 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
3
Sequence:
Chromosome: 9; NC_012072.1 (493010..496498, complement)

Chromosome 9 - NC_012072.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012072.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actomyosin structure organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptidyl-threonine phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012072.1 Reference assembly

    Range
    493010..496498 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002292420.1 → XP_002292456.1  predicted protein [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002292456.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C853
    Conserved Domains (4) summary
    pfam04568
    Location:557 → 585
    IATP; Mitochondrial ATPase inhibitor, IATP
    pfam05010
    Location:636 → 812
    TACC; Transforming acidic coiled-coil-containing protein (TACC)
    pfam09304
    Location:754 → 850
    Cortex-I_coil; Cortexillin I, coiled coil
    pfam15898
    Location:683 → 784
    PRKG1_interact; cGMP-dependent protein kinase interacting domain
Nucleotide Protein
Heading Accession and Version

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