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THAPSDRAFT_263495 hypothetical protein [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7449276, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_263495
Gene description
hypothetical protein
Locus tag
THAPSDRAFT_263495
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_263495 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
7
Sequence:
Chromosome: 9; NC_012072.1 (204813..207544)

Chromosome 9 - NC_012072.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012072.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5'-RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables polyribonucleotide nucleotidyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial RNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_002292192.1
  • Putative protein similar to polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) (PNPase) custom_KEGG (model%: 69, hit%: 88, score: 812, %id: 30) [Listeria innocua] and syn:sll1043 polyribonucleotide nucleotidyltransferase custom_KEGG (model%: 69, hit%: 91, score: 725, %id: 31) [Synechocystis sp. PCC 6803]; EST support; putative protein similar to polyribonucleotide nucleotidyltransferase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012072.1 Reference assembly

    Range
    204813..207544
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002292156.1 → XP_002292192.1  hypothetical protein THAPSDRAFT_263495, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002292192.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8C7U5
    Conserved Domains (4) summary
    PRK11824
    Location:1 → 651
    PRK11824; polynucleotide phosphorylase/polyadenylase; Provisional
    cl00098
    Location:506 → 563
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cl03114
    Location:277 → 490
    RNase_PH; RNase PH-like 3'-5' exoribonucleases
    cl09927
    Location:572 → 647
    S1_like; S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. ...
Nucleotide Protein
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